Tuesday, August 25, 2015

Neuroanatomy, Neurophysiology and Neuropharmacology: The Basics

Lecture Notes

I.  Brief, Basic Chemistry Review (Appendix A- pg 486)
  A. Elements and Compounds

1. As stated in Chapter 1, the Big Bang initially produced 4 forces- 1. gravity, 2. electromagnitism  3. strong nuclear forces and 4. weak nuclear forces.  Chemistry is the study of the weak nuclear forces found in compounds. The weak nuclear forces allow for chemical reactions which are the transfer of ions and molecules to make new molecules and compounds. When wood is burned it turns into ashes and gases and water vapor and also produces heat. These are all chemical reactions. The basis of chemical reactions is the interaction of  elemental chemicals.  The periodic table lists 92 elements of which only are few are found in living organisms. Some of the most important are listed here.

Q. What are the most important elements in living organisms?

2. Compounds are made from molecules which are made from elements. Elements that  are listed on the Periodic Table are comprised of atoms.   For instance, when listed on the Periodic Table, Hydrogen has an atomic number of  #1 and Oxygen is #16. The atomic number corresponds to the number of protons in the nucleus of an atom of that element. It also corresponds to the number of electrons in the neutral atom. When atoms come together, they make molecular compounds. Water is a compound or molecule. Compounds are created  when electrons from different atoms join each other in chemical reactions. For instance, the molecules of water are elements Hydrogen and Oxygen. On each water molecule are two atoms of hydrogen and 1 atom of oxygen (H20). Each atom is composed of subatomic particles, protons, neutrons and electrons, which are positively charged, neutral and negatively charged- in that order.  Protons and neutrons are found in the center of the atom, the nucleus and electrons are found in the space around the nucleus. It is very very difficult to separate protons which is a property of strong nuclear forces. The result of breaking those nuclear bonds is an atomic bomb. In a stable state, an atom will have the same number of protons as electrons. Molecules prefer a stable state to an unstable state and this is what drives ma

Q. What  is the atomic number for Oxygen, Hydrogen and Carbon? What do these numbers mean?

    B. Ions

3. An atom that has gained or lost one or more electron is called an ion.  When the compound salt NaCl (Sodium and Chloride) is placed in water it dissolves or dissociates into ions: Na+ and Cl-.  Sodium atoms lose electrons and become positively charged (has space available to accept an electron).  A negatively charged ion, like Cl- has an extra electron. Thus ions with opposite charges attract each other and ions with the same charge repel each other. This is a property of electromagnitism and contributes to the property of weak nuclear forces.

In some cultures physics and chemistry are taught before biology because these fields underlie the very complex mechanisms necessary for biological systems. The topics above provide an extremely brief background for processes that are involved in synaptic transmission.

Friday, August 21, 2015

Textbook Module 1.2 Genetics and Behavior

Module 1.2 Genetics and Behavior   January 20, 2015

PLEASE READ THE ENTIRE MODULE 1.2 FROM THE TEXTBOOK AND THEN READ THESE NOTES. PAY PARTICULAR ATTENTION TO THE MATERIAL IN RED THAT IS BELOW. THE RED TEXT MAY BE USED FOR QUIZ/TEST QUESTIONS.  

Mendelian Genetics

The book concludes that it is both Nature and Nurture since the Module begins with the statement "Everything you do depends on both your genes and your environment."

The evidence provided for this statement is facial expressions. What kind of observations led to the conclusion about facial expressions?  Other behaviors listed are intelligence, sexual orientation, alcoholism and weight gain.  Could you provide evidence for both genetic and environmental influences on these behaviors?

 I understand that many of you may have taken Biology some time ago, so you may be unfamiliar with Mendelian Genetics. I've tried to provide a brief but effective re-introduction, starting with this video.


A much broader view of Figure 1.7 and Figure 1.9 
Here you will be reminded that living tissue is made up of cells. Every cell has a nucleus, Every nucleus contains materials for the replication of the cell, genes. Genes are made up of DNA.  RNA is used to replicate the gene from the DNA.
 
According to the text, Genes are units of heredity that maintain their structural identity from one generation to another. Genes are defined as a portion of a chromosome which is composed of the double-stranded molecule DNA. Here's a movie to help visualize this.  (Please watch the videos SEVERAL times in order to answer the questions in red below.)

Genes are reproduced through a process of DNA replication and DNA transcription.  A strand of DNA serves as a template for the synthesis of RNA, a process called transcription.

From the Videos above answer the following questions.
1. could you explain how the following terms differ from one another?
DNA,  Chromatin, Chromasomes, Histones, Nucleosome

2. How many molecules of DNA are synthesized by RNA.

Once there is a single strand of messageRNA or mRNA (copied DNA), the strand leaves the nucleus and is joined to ribosomes where amino acids sequences produce proteins. This process is translation.

Genes can be dominant, recessive or intermediate.  Here's an explanation using what Mendel used, peas.

From the Video define- allele, genotype and phenotype.
 The list of traits given at the beginning of the chapter include intelligence, sexual orientation, alcoholism and weight gain. Now that you have a clearer understanding of genotype and phenotype, do you believe there is a genetic basis for intelligence, sexual orientation alcoholism or weight gain.  Be able to explain your answer?


Genetic Changes

Genes can change and therefore the transcription by mRNA will be altered as well as translation of proteins as the final outcome.

Mutations of the gene (incl. duplication and deletion)
Epigenetics- Various experiences can turn a gene on or off.  Evidence of epigenetic effects come mainly from animal studies, several of which were described on pg. 12.

What did Godfrey et al, 2007 discover about obesity and heart disease?
What did Weaver et al, (2004) find out about the effects of maternal care on stress levels of rat pups?

How does an experience modify gene expression?

Heredity and Environment

Evidence about the influence of heredity and environment often come from twin studies. Why?

What does it mean to be a monozygotic or dizygotic twin?

Evolutionary Psychology

Define the terms: altruism, kin selection and reciprocal altrusim

Textbook Module 5.1 Neural Development

Neurogenesis 

Please review the links to help understand the process. 

ONLINE VIDEOS to Visualize Neural Tube

Closer look at neural tube formation

Brain Development video

Fetal Development

Coloring Book Assignment for Neurogenesis (Understand these processes)

CB 4.2 Processes of Early Neural Development

 Stage 1- Proliferation

Stage 2- Migration
      Radial Glial cells

Stage 3-Aggregation
    Growth Cones and Circuit formation

Stage 4- Process Growth and Synapse Formation
     Circuit pruning

Stage 5- Neuron Death

Stage 6 Myelination

CB 4.5 Axon Growth: Correctly Wiring the Nervous System

A. Chemoaffinity theory

B. Blueprint theory
       pioneer growth cones
       fasciculation

CB 4.6 Adult Neurogenesis

Adult neurogenesis and recovery from brain damage.

 

Textbook Module 1.1 Coloring Book Assignments

FROM A colorful Introduction to the Anatomy of the Human Brain 2nd Edition John Pinel and Maggie Edwards (2008)


Neurodevelopment-
   Coloring  Book Unit 4.1 (pg 53) through 4.6 (65) and Review (pg 66 - 69) and 5.2 ( pg 74 )
 Review your paragraph on neurogenesis.


Planes of Section
     CB Chapter 2 (Entire Chapter) and Review Exercises 2.1 through 2.4 (pg 28 - 30)
Exercise done in class.   


Thursday, August 20, 2015

Psych 412 FA 2015 COURSE INTRODUCTION

Introduction to the Course


1. Syllabus
    Objectives, Office hours, Office location

2. Types of Assignments
    Blackboard quizzes
    In-class quizzes
    Coloring Book
    Textbook Module

3. Blackboard
       
4. Course blog

5. Exams and Grading Formula

6. Teaching Assistant- Sophia Howard